Reconstruction Phylogenetics

Overview of the phylogenetic analysis into Geminivirus Data Warehouse.
For visualization of the phylogenetic relationship or grouping from the user's input sequence, the Geminivirus Data Warehouse implements faster and optimized tools and user-friendly system. Initially, the user's input sequence is aligned using MUSCLE algorithm. Then, an output file of the aligment is generated, which contains a list of the best hits (GenBank access number, country, viral specie, length of sequence, alignment coverage and identity). From this list, the user can strategically select some sequences and run the phylogeny analysis automatically into Geminivirus Data Warehouse. Finally, the phylogenetic tree can be directly visualized.