BLAST Begomovirus Data Warehouse



An overview of a search for viral sequences through Basic Local Alignment Search Tool (BLAST) into Geminivirus Data Warehouse.
Local alignment is performed using full-length or partial CDS sequences (or by genome or protein sequence) against other sequences in the database using the BLASTn algorithm (or BLASTp or BLASTx). The BLAST results are presented as a dynamical table containing a list of the best hits, in a decreasing order. These columns correspond to GenBank accession number of the viral sequence, origin country, sequence length, virus species and, respectively, score and expected value of alignments.